Modeling of intravenous caspofungin administration using an intestine-on-chip reveals altered Candida albicans microcolonies and pathogenicity

Tim Kaden, Raquel Alonso-Román, Parastoo Akbarimoghaddam, Alexander S. Mosig, Katja Graf, Martin Raasch, Bianca Hoffmann, Marc T. Figge, Bernhard Hube, Mark S. Gresnigt

1_0.25caspo_x10_bf_1.czi 4 GB 1_0.25caspo_x10_bf_2.czi 4 GB 1_0.25caspo_x10_bf_3.czi 4 GB 1_0.25caspo_x10_bf_4.czi 4 GB 1_0.25caspo_x10_bf_5.czi 4 GB 1_0.25caspo_x10_bf_6.czi 2 GB 1_0caspo_x10_bf_1.czi 2 GB 1_0caspo_x10_bf_2.czi 2 GB 1_0caspo_x10_bf_3.czi 2 GB 1_0caspo_x10_bf_4.czi 3 GB 1_0caspo_x10_bf_5.czi 3 GB 1_1caspo_x10_bf_1.czi 2 GB 1_1caspo_x10_bf_2.czi 2 GB 1_1caspo_x10_bf_3.czi 2 GB 1_1caspo_x10_bf_4.czi 3 GB 1_1caspo_x10_bf_5.czi 2 GB 1_4caspo_x10_bf_1.czi 2 GB 1_4caspo_x10_bf_2.czi 4 GB 1_4caspo_x10_bf_3.czi 2 GB 1_4caspo_x10_bf_4.czi 2 GB 1_4caspo_x10_bf_5.czi 2 GB 2_0.25caspo_x10_bf_1.czi 2 GB 2_0.25caspo_x10_bf_2.czi 2 GB 2_0.25caspo_x10_bf_3.czi 2 GB 2_0.25caspo_x10_bf_4.czi 2 GB 2_0.25caspo_x10_bf_5.czi 2 GB 2_0caspo_x10_bf_1.czi 2 GB 2_0caspo_x10_bf_2.czi 2 GB 2_0caspo_x10_bf_3.czi 2 GB 2_0caspo_x10_bf_4.czi 2 GB 2_0caspo_x10_bf_5.czi 2 GB 2_1caspo_x10_bf_1.czi 2 GB 2_1caspo_x10_bf_2.czi 2 GB 2_1caspo_x10_bf_3.czi 2 GB 2_1caspo_x10_bf_4.czi 2 GB 2_1caspo_x10_bf_5.czi 2 GB 2_1caspo_x10_bf_6.czi 2 GB 2_4caspo_x10_bf_1.czi 2 GB 2_4caspo_x10_bf_2.czi 2 GB 2_4caspo_x10_bf_3.czi 2 GB 2_4caspo_x10_bf_4.czi 2 GB 2_4caspo_x10_bf_5.czi 2 GB 3_0.25caspo_x10_bf_1.czi 3 GB 3_0.25caspo_x10_bf_2.czi 3 GB 3_0.25caspo_x10_bf_3.czi 2 GB 3_0.25caspo_x10_bf_4.czi 3 GB 3_0.25caspo_x10_bf_5.czi 2 GB 3_0caspo_x10_bf_1.czi 3 GB 3_0caspo_x10_bf_2.czi 2 GB 3_0caspo_x10_bf_3.czi 2 GB 3_0caspo_x10_bf_4.czi 2 GB 3_0caspo_x10_bf_5.czi 2 GB 3_1caspo_x10_bf_1.czi 2 GB 3_1caspo_x10_bf_2.czi 3 GB 3_1caspo_x10_bf_3.czi 3 GB 3_1caspo_x10_bf_4.czi 3 GB 3_1caspo_x10_bf_5.czi 3 GB 3_4caspo_x10_bf_1.czi 3 GB 3_4caspo_x10_bf_2.czi 3 GB 3_4caspo_x10_bf_3.czi 3 GB 3_4caspo_x10_bf_4.czi 3 GB 3_4caspo_x10_bf_5.czi 3 GB

This folder contains the data and image analysis codes required to reproduce our findings. More information on how to run the analysis, can be found in Readme.txt!


Contents

Data: The raw microbiological and biomolecular data and the preprocessed images using the software Huygens Professional

Codes: The image analysis scripts used for generating the results

Example: Example of image analysis steps

Quantifications: Quantifications derived from the images

Readme.txt: More information on data and codes